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start [2017/05/24 16:58]
xl24 [Development]
start [2019/01/11 22:31]
ll61 [Members]
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 ==== Members ==== ==== Members ====
 +  * [[https://​scholar.google.com/​citations?​user=4Phq4OcAAAAJ&​hl=en|Ansel Blumers]]
   * [[https://​scholar.google.com/​citations?​user=jlI9vl0AAAAJ&​hl=zh-CN|Hung-Yu Chang]]   * [[https://​scholar.google.com/​citations?​user=jlI9vl0AAAAJ&​hl=zh-CN|Hung-Yu Chang]]
-  * [[Yixiang Deng]]+  * [[https://​www.researchgate.net/​profile/​Yixiang_Deng|Yixiang Deng]]
   * [[https://​scholar.google.com/​citations?​user=UkEzo8sAAAAJ&​hl=en|He Li]]   * [[https://​scholar.google.com/​citations?​user=UkEzo8sAAAAJ&​hl=en|He Li]]
   * [[http://​www.dam.brown.edu/​people/​xli/​|Xuejin Li]]   * [[http://​www.dam.brown.edu/​people/​xli/​|Xuejin Li]]
   * [[Zhen Li]]   * [[Zhen Li]]
-  * [[Lu Lu]]+  * [[https://​lululxvi.github.io|Lu Lu]]
   * [[Yu-Hang Tang]]   * [[Yu-Hang Tang]]
   * [[Liu Yang]]   * [[Liu Yang]]
   * [[Alireza Yazdani]]   * [[Alireza Yazdani]]
   * [[https://​www.researchgate.net/​profile/​Minglang_Yin|Minglang Yin]]   * [[https://​www.researchgate.net/​profile/​Minglang_Yin|Minglang Yin]]
-  * [[Lifei Zhao]] 
   * [[https://​www.researchgate.net/​profile/​Xiaoning_Zheng|Xiaoning Zheng]]   * [[https://​www.researchgate.net/​profile/​Xiaoning_Zheng|Xiaoning Zheng]]
   * [[http://​www.cfm.brown.edu/​people/​gk/​|Prof. George Karniadakis]]   * [[http://​www.cfm.brown.edu/​people/​gk/​|Prof. George Karniadakis]]
 +  * [[https://​www.brown.edu/​academics/​applied-mathematics/​martin-maxey|Prof. Martin Maxey]]
   * [[https://​vivo.brown.edu/​display/​bcaswell|Prof. Bruce Caswell]]   * [[https://​vivo.brown.edu/​display/​bcaswell|Prof. Bruce Caswell]]
-  * [[https://​www.brown.edu/​academics/​applied-mathematics/​martin-maxey|Prof. Martin Maxey]] 
- 
 ---- ----
 ==== Weekly Seminar ==== ==== Weekly Seminar ====
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 A couple of software projects have been actively developed within the group and available under the GPL license to the general public. A couple of software projects have been actively developed within the group and available under the GPL license to the general public.
  
-[[user-meso:main|USER-MESO]] \\+[[https://​github.com/​yhtang/​MESO|USER-MESO]] \\
  
 [[https://​data.mendeley.com/​datasets/​89849t3ngk/​1|USER-MESO 2.0]] [[https://​data.mendeley.com/​datasets/​89849t3ngk/​1|USER-MESO 2.0]]
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 [[list_of_the_crunch_group_publications_on_dpd|Main article: List of Crunch Group Publications on DPD]] [[list_of_the_crunch_group_publications_on_dpd|Main article: List of Crunch Group Publications on DPD]]
  
 +  - L. Lu, H. Li, X. Bian, X. Li, and G. E. Karniadakis. [[http://​dx.doi.org/​10.1016/​j.bpj.2017.05.05| Mesoscopic adaptive resolution scheme toward understanding of interactions between sickle cell fibers]]. //Biophys. J.//, 2017, 113, 48-59. (Cover Article)
 +  - H.-Y. Chang, X. Li, and G. E. Karniadakis. [[http://​dx.doi.org/​10.1016/​j.bpj.2017.06.015|Modeling of biomechanics and biorheology of red blood cells in type-2 diabetes mellitus]]. //Biophys. J.//, 2017, 113, 481-490. (BJ Highlighted Article)
   - Y.-H. Tang, L. Lu, H. Li, C. Evangelinos,​ L. Grinberg, V. Sachdeva, and G. E. Karniadakis. [[http://​www.cell.com/​biophysj/​fulltext/​S0006-3495(17)30436-8|OpenRBC:​ A fast simulator of red blood cells at protein resolution]]. //Biophys. J.//, 2017, 112, 2030-2037.   - Y.-H. Tang, L. Lu, H. Li, C. Evangelinos,​ L. Grinberg, V. Sachdeva, and G. E. Karniadakis. [[http://​www.cell.com/​biophysj/​fulltext/​S0006-3495(17)30436-8|OpenRBC:​ A fast simulator of red blood cells at protein resolution]]. //Biophys. J.//, 2017, 112, 2030-2037.
   - A. L. Blumers, Y.-H. Tang, Z. Li, X. Li and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0010465517301042|GPU-accelerated red blood cells simulations with transport dissipative particle dynamics]]. //Comput. Phys. Commun.//, 2017, 217, 171-179.   - A. L. Blumers, Y.-H. Tang, Z. Li, X. Li and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0010465517301042|GPU-accelerated red blood cells simulations with transport dissipative particle dynamics]]. //Comput. Phys. Commun.//, 2017, 217, 171-179.
-  - Li, HS Lee, E DarveGE Karniadakis. [[http://aip.scitation.org/doi/full/10.1063/1.4973347|Computing the non-Markovian coarse-grained interactions derived from the Mori–Zwanzig formalism in molecular systems: Application to polymer melts]]. //J. ChemPhys.//, 2017, 146014104.+  - X. Li, E. DuM. Dao, S. Suresh, and G. E. Karniadakis. [[http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005426|Patient-specific modeling of individual sickle cell behavior under transient hypoxia]]. //PLOS ComputBiol.//, 2017, 13e1005426.
   - X Bian, C Kim, GE Karniadakis. [[http://​pubs.rsc.org/​en/​content/​articlehtml/​2016/​sm/​c6sm01153e|111 years of Brownian motion]]. //Soft Matter//, 2016, 12, 6331-6346.   - X Bian, C Kim, GE Karniadakis. [[http://​pubs.rsc.org/​en/​content/​articlehtml/​2016/​sm/​c6sm01153e|111 years of Brownian motion]]. //Soft Matter//, 2016, 12, 6331-6346.
-  - Y.-HTangZ. Li, X. J. Li, M. G. Deng and G. E. Karniadakis. [[http://pubs.acs.org/doi/abs/10.1021/acs.macromol.6b00365|Non-equilibrium dynamics ​of vesicles ​and micelles by self-assembly of block copolymers with double thermoresponsivity]]. //Macromolecules//2016, 492895–2903.+  - H.-YChangX. Li, H. Li, and G. E. Karniadakis. [[http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005173|MD/DPD multiscale framework for predicting morphology and stresses ​of red blood cells in health ​and disease]]. //PLOS Comput. Biol.// 2016, 12e1005173.
   - Y.-H. Tang, S. Kudo, X. Bian, Z. Li and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0021999115003228|Multiscale Universal Interface: A Concurrent Framework for Coupling Heterogeneous Solvers]]. //J. Comput. Phys.//, 2015, 297, 13-31.   - Y.-H. Tang, S. Kudo, X. Bian, Z. Li and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0021999115003228|Multiscale Universal Interface: A Concurrent Framework for Coupling Heterogeneous Solvers]]. //J. Comput. Phys.//, 2015, 297, 13-31.
   - Z. Li, Y.-H. Tang, X. J. Li and G. E. Karniadakis. [[http://​pubs.rsc.org/​en/​content/​articlehtml/​2015/​cc/​c5cc01684c|Mesoscale modeling of phase transition of thermoresponsive polymers]]. //Chem. Commun.//, 2015, 51, 11038-11040.   - Z. Li, Y.-H. Tang, X. J. Li and G. E. Karniadakis. [[http://​pubs.rsc.org/​en/​content/​articlehtml/​2015/​cc/​c5cc01684c|Mesoscale modeling of phase transition of thermoresponsive polymers]]. //Chem. Commun.//, 2015, 51, 11038-11040.
 +  - K. Lykov, X. J. Li, I. V. Pivkin and G. E. Karniadakis. [[http://​journals.plos.org/​ploscompbiol/​article?​id=10.1371/​journal.pcbi.1004410|Inflow/​Outflow boundary conditions for particle-based blood flow simulations:​ Application to arterial bifurcations and trees]]. //PLOS Comput. Biol.//, 2015, 11, e1004410.
   - Y.-H. Tang and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0010465514002203|Accelerating Dissipative Particle Dynamics Simulations on GPUs: Algorithms, Numerics and Applications]]. //Comput. Phys. Commun.//, 2014, 185, 2809-2822.   - Y.-H. Tang and G. E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0010465514002203|Accelerating Dissipative Particle Dynamics Simulations on GPUs: Algorithms, Numerics and Applications]]. //Comput. Phys. Commun.//, 2014, 185, 2809-2822.
   - Z. Li, Y.-H. Tang, H. Lei, B. Caswell and G.E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0021999114000977|Energy-conserving dissipative particle dynamics with temperature-dependent properties]]. //J. Comput. Phys.//, 2014, 265, 113-127.   - Z. Li, Y.-H. Tang, H. Lei, B. Caswell and G.E. Karniadakis. [[http://​www.sciencedirect.com/​science/​article/​pii/​S0021999114000977|Energy-conserving dissipative particle dynamics with temperature-dependent properties]]. //J. Comput. Phys.//, 2014, 265, 113-127.

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