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list_of_the_crunch_group_publications_on_dpd [2017/05/24 20:48] xl24 [DPD + X] |
list_of_the_crunch_group_publications_on_dpd [2017/05/24 20:56] xl24 [Biomedical/Multiscale/Microfluidic Modeling] |
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===== Biomedical/Multiscale/Microfluidic Modeling ===== | ===== Biomedical/Multiscale/Microfluidic Modeling ===== | ||
+ | - Y.-H. Tang, L. Lu, H. Li, C. Evangelinos, L. Grinberg, V. Sachdeva, and G. E. Karniadakis. OpenRBC: A fast simulator of red blood cells at protein resolution. //Biophys. J.//, 2017, 112, 2030-2037. | ||
+ | - A. L. Blumers, Y.-H. Tang, Z. Li, X. Li and G. E. Karniadakis. GPU-accelerated red blood cells simulations with transport dissipative particle dynamics. //Comput. Phys. Commun.//, 2017, 217, 171-179. | ||
+ | - X. Li, E. Du, M. Dao, S. Suresh, and G. E. Karniadakis. Patient-specific modeling of individual sickle cell behavior under transient hypoxia. //PLOS Comput. Biol.//, 2017, 13, e1005426. | ||
+ | - A. Yazdani, H. Li, J. D. Humphrey, and G. E. Karniadakis. A general shear-dependent model for thrombus formation. //PLOS Comput. Biol.//, 2017, 13, e1005291. | ||
- X. Li, M. Dao, G. Lykotrafitis, and G. E. Karniadakis. Biomechanics and biorheology of red blood cells in sickle cell anemia. J. Biomech. 2017, 50, 34-41. | - X. Li, M. Dao, G. Lykotrafitis, and G. E. Karniadakis. Biomechanics and biorheology of red blood cells in sickle cell anemia. J. Biomech. 2017, 50, 34-41. | ||
- H.-Y. Chang, X. Li, H. Li, and G. E. Karniadakis. MD/DPD multiscale framework for predicting morphology and stresses of red blood cells in health and disease. PLOS Comput. Biol. 2016, 12, e1005173. | - H.-Y. Chang, X. Li, H. Li, and G. E. Karniadakis. MD/DPD multiscale framework for predicting morphology and stresses of red blood cells in health and disease. PLOS Comput. Biol. 2016, 12, e1005173. | ||
+ | - A. Yazdani and G. E. Karniadakis. Sub-cellular modeling of platelet transport in blood flow through microchannels with constriction. //Soft Matter//, 2016, 12, 4339-4351. | ||
- A. Yazdani, X. Li, and G. E. Karniadakis. Dynamic and rheological properties of soft biological cell suspensions. Rheol. Acta 2016, 55, 433-449. | - A. Yazdani, X. Li, and G. E. Karniadakis. Dynamic and rheological properties of soft biological cell suspensions. Rheol. Acta 2016, 55, 433-449. | ||
- L. Lu, X. J. Li, P. G. Vekilov, and G. E. Karniadakis. Probing the twisted structure of sickle hemoglobin fibers via particle simulations. Biophys. J. 2016, 110, 2085-2093. | - L. Lu, X. J. Li, P. G. Vekilov, and G. E. Karniadakis. Probing the twisted structure of sickle hemoglobin fibers via particle simulations. Biophys. J. 2016, 110, 2085-2093. | ||
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- H. Lei, B. Caswell, and G.E. Karniadakis. Direct construction of mesoscopic models from microscopic simulations. //Phys. Rev. E//, 2010, 81, 026704. | - H. Lei, B. Caswell, and G.E. Karniadakis. Direct construction of mesoscopic models from microscopic simulations. //Phys. Rev. E//, 2010, 81, 026704. | ||
- W. Pan, B. Caswell, and G. E. Karniadakis. Rheology, Microstructure and Migration in Brownian Colloidal Suspensions. //Langmuir//, 2010, 26, 133-142. | - W. Pan, B. Caswell, and G. E. Karniadakis. Rheology, Microstructure and Migration in Brownian Colloidal Suspensions. //Langmuir//, 2010, 26, 133-142. | ||
+ | - D. A. Fedosov and G.E. Karniadakis. Triple-decker: Interfacing atomistic-mesocopic-continuum flow regimes. //J. Comput. Phys.//, 2009, 228, 1157-1171. | ||
- W. Pan, I.V. Pivkin, and G.E. Karniadakis. Single-particle hydrodynamics in DPD: A new formulation. //Europhys. Lett.//, 2008, 84, 10012. | - W. Pan, I.V. Pivkin, and G.E. Karniadakis. Single-particle hydrodynamics in DPD: A new formulation. //Europhys. Lett.//, 2008, 84, 10012. | ||
+ | - D. A. Fedosov, I.V. Pivkin, and G.E. Karniadakis. Velocity limit in DPD simulations of wall-bounded flows. //J. Comput. Phys.//, 2008, 227, 2540-2559. | ||
- I.V. Pivkin and G.E. Karniadakis. Controlling density fluctuations in wall bounded DPD systems. //Phys. Rev. Letts.//, 2006, 96, 206001. | - I.V. Pivkin and G.E. Karniadakis. Controlling density fluctuations in wall bounded DPD systems. //Phys. Rev. Letts.//, 2006, 96, 206001. | ||
- I.V. Pivkin and G.E. Karniadakis. Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems. //J. Chem. Phys.//, 2006, 124, 184101. | - I.V. Pivkin and G.E. Karniadakis. Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems. //J. Chem. Phys.//, 2006, 124, 184101. | ||
+ | - V. Symeonidis, G.E. Karniadakis, and B. Caswell. Schmidt number effects in simulation of polymer dissipative particle dynamics. //J. Chem. Phys.//, 2006, 125, 184902. | ||
- V. Symeonidis, G.E. Karniadakis and B. Caswell. Dissipative particle dynamics simulations of polymer chains: Scaling laws and shearing response compared to DNA experiments. //Phys. Rev. Lett.//, 2005, 95, 076001. | - V. Symeonidis, G.E. Karniadakis and B. Caswell. Dissipative particle dynamics simulations of polymer chains: Scaling laws and shearing response compared to DNA experiments. //Phys. Rev. Lett.//, 2005, 95, 076001. | ||
- I.V. Pivkin and G.E. Karniadakis. A new method to impose no-slip boundary conditions in dissipative particles dynamics. //J. Comp. Phys.//, 2005, 207, 114-128. | - I.V. Pivkin and G.E. Karniadakis. A new method to impose no-slip boundary conditions in dissipative particles dynamics. //J. Comp. Phys.//, 2005, 207, 114-128. |