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list_of_the_crunch_group_publications_on_dpd [2017/05/24 20:36] xl24 [Biomedical/Multiscale/Microfluidic Modeling] |
list_of_the_crunch_group_publications_on_dpd [2017/05/24 20:45] xl24 [DPD + X] |
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| - X.J. Li, I.V. Pivkin, H.J. Liang and G.E. Karniadakis. Shape transformation of membrane vesicles from amphiphilic triblock copolymers: A dissipative particle dynamics simulation study. //Macromolecules//, 2009, 42, 3195-3200. | - X.J. Li, I.V. Pivkin, H.J. Liang and G.E. Karniadakis. Shape transformation of membrane vesicles from amphiphilic triblock copolymers: A dissipative particle dynamics simulation study. //Macromolecules//, 2009, 42, 3195-3200. | ||
| - I.V. Pivkin and G.E. Karniadakis. Accurate coarse-grained modeling of red blood cells. //Phys. Rev. Letts.//, 2008, 101, 118105. | - I.V. Pivkin and G.E. Karniadakis. Accurate coarse-grained modeling of red blood cells. //Phys. Rev. Letts.//, 2008, 101, 118105. | ||
| - | - I.V. Pivkin and G.E. Karniadakis. Controlling density fluctuations in wall bounded DPD systems. //Phys. Rev. Letts.//, 2006, 96, 206001. | ||
| - | - I.V. Pivkin and G.E. Karniadakis. Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems. //J. Chem. Phys.//, 2006, 124, 184101. | ||
| - | - V. Symeonidis, G.E. Karniadakis and B. Caswell. Dissipative particle dynamics simulations of polymer chains: Scaling laws and shearing response compared to DNA experiments. //Phys. Rev. Lett.//, 2005, 95, 076001. | ||
| - | - I.V. Pivkin and G.E. Karniadakis. A new method to impose no-slip boundary conditions in dissipative particles dynamics. //J. Comp. Phys.//, 2005, 207, 114-128. | ||
| - | ===== MUI ===== | ||
| - | - Y.-H. Tang, S. Kudo, X. Bian, Z. Li and G. E. Karniadakis. Multiscale Universal Interface: A Concurrent Framework for Coupling Heterogeneous Solvers. //J. Comput. Phys.//, 2015, 297, 13-31. | ||
| - | - X. Bian, Z. Li and G. E. Karniadakis. Multi-resolution flow simulations by smoothed particle hydrodynamics via domain decomposition. //J. Comput. Phys.//, 2015, 297, 132-155. | ||
| - | - X. Bian, M. G. Deng, Y.-H. Tang and G. E. Karniadakis. Analysis of hydrodynamic fluctuations in heterogeneous adjacent multidomains in shear flow. // Phys. Rev. E//, 2016, 93, 033312. | ||
| ===== DPD + X ===== | ===== DPD + X ===== | ||
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| - Z. Li, Y.-H. Tang, H. Lei, B. Caswell and G. E. Karniadakis. Energy-conserving dissipative particle dynamics with temperature-dependent properties. //J. Comput. Phys.//, 2014, 265: 113-127. | - Z. Li, Y.-H. Tang, H. Lei, B. Caswell and G. E. Karniadakis. Energy-conserving dissipative particle dynamics with temperature-dependent properties. //J. Comput. Phys.//, 2014, 265: 113-127. | ||
| - M. Arienti, W. Pan, X. Li, G. E. Karniadakis. Many-body dissipative particle dynamics simulation of liquid/vapor and liquid/solid interactions. //J. Chem. Phys.//, 2011, 134: 204114. | - M. Arienti, W. Pan, X. Li, G. E. Karniadakis. Many-body dissipative particle dynamics simulation of liquid/vapor and liquid/solid interactions. //J. Chem. Phys.//, 2011, 134: 204114. | ||
| - | ===== Self Assembly ===== | + | - I.V. Pivkin and G.E. Karniadakis. Controlling density fluctuations in wall bounded DPD systems. //Phys. Rev. Letts.//, 2006, 96, 206001. |
| - | - Y.-H. Tang, Z. Li, X. J. Li, M. G. Deng and G. E. Karniadakis. Non-equilibrium dynamics of vesicles and micelles by self-assembly of block copolymers with double thermoresponsivity. Macromolecules, 2016, 49, 2895–2903. | + | - I.V. Pivkin and G.E. Karniadakis. Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems. //J. Chem. Phys.//, 2006, 124, 184101. |
| - | - X. J. Li, Y.-H. Tang, H. J. Liang, and G. E. Karniadakis. Large-scale dissipative particle dynamics simulations of self-assembled amphiphilic systems. //Chem. Commun.// 2014, 50, 8306-8308. | + | - V. Symeonidis, G.E. Karniadakis and B. Caswell. Dissipative particle dynamics simulations of polymer chains: Scaling laws and shearing response compared to DNA experiments. //Phys. Rev. Lett.//, 2005, 95, 076001. |
| - | - X. J. Li, B. Caswell, and G. E. Karniadakis. Effect of chain chirality on the self-assembly of sickle hemoglobin. //Biophys. J.// 2012, 103, 1130-1140. | + | - I.V. Pivkin and G.E. Karniadakis. A new method to impose no-slip boundary conditions in dissipative particles dynamics. //J. Comp. Phys.//, 2005, 207, 114-128. |
| + | |||
| + | ===== Multiscale Universal Interface (MUI) and its applications ===== | ||
| + | - Y.-H. Tang, S. Kudo, X. Bian, Z. Li and G. E. Karniadakis. Multiscale Universal Interface: A Concurrent Framework for Coupling Heterogeneous Solvers. //J. Comput. Phys.//, 2015, 297, 13-31. | ||
| + | - X. Bian, Z. Li and G. E. Karniadakis. Multi-resolution flow simulations by smoothed particle hydrodynamics via domain decomposition. //J. Comput. Phys.//, 2015, 297, 132-155. | ||
| + | - X. Bian, Z. Li, M. G. Deng, and G. E. Karniadakis. Fluctuating hydrodynamics in periodic domains and heterogeneous adjacent multidomains: Thermal equilibrium. // Phys. Rev. E//, 2015, 92, 053302. | ||
| + | - X. Bian, M. G. Deng, Y.-H. Tang and G. E. Karniadakis. Analysis of hydrodynamic fluctuations in heterogeneous adjacent multidomains in shear flow. // Phys. Rev. E//, 2016, 93, 033312. | ||
| + | - A. Yazdani, M. Deng, B. Caswell, and G. E. Karniadakis. Flow in complex domains simulated by dissipative particle dynamics driven by geometry-specific body-forces. //J. Comput. Phys.//, 2016, 305, 906-920. | ||
| + | - S. Lee, I. G. Kevrekidis, and G. E. Karniadakis. A resilient and efficient CFD framework: Statistical learning tools for multi-fidelity and heterogeneous information fusion. //J. Comput. Phys.//, 2017, 344, 516-533. | ||
